WorldFlora

WorldFlora standardizes and validates plant scientific names by matching user-submitted names against the World Flora Online Taxonomic Backbone (WFO) to support accurate taxonomic identification.


Key Features:

  • Exact and fuzzy matching: Employs direct (exact) and fuzzy string-matching algorithms to align scientific, taxonomic, and botanical names with entries in the WFO backbone.
  • Integration with World Flora Online Taxonomic Backbone (WFO): Uses a static version of the WFO Taxonomic Backbone as the reference dataset for name validation and standardization.
  • High matching success: Demonstrates matching success rates ranging from 94.7% to 99.9% across benchmark datasets, including commercial timber tree species and datasets used for comparing taxon name correction software.
  • Semi-automatic pipeline: Implements a semi-automatic pipeline to perform plant name checking and to produce standardized taxon name outputs.

Scientific Applications:

  • Biodiversity assessment: Standardizes species names in occurrence and inventory datasets to improve biodiversity estimates and data integration.
  • Biogeography: Harmonizes taxonomic names across spatial datasets to support analyses of species distributions and biogeographic patterns.
  • Vegetation and ecological research: Provides standardized taxon names for vegetation studies and ecological modeling that require consistent nomenclature.
  • Conservation planning: Ensures consistent species names in conservation datasets and assessments used for planning and policy decisions.

Methodology:

Applies exact and fuzzy matching of user-submitted plant names against a static WFO Taxonomic Backbone and selects the best single match for each name.

Topics

Details

License:
GPL-2.0
Added:
1/18/2021
Last Updated:
3/18/2021

Operations

Publications

Kindt R. WorldFlora: An R package for exact and fuzzy matching of plant names against the World Flora Online Taxonomic Backbone data. Unknown Journal. 2020. doi:10.1101/2020.02.02.930719.