wossdata

wossdata provides components within the EMBOSS suite for developing, customizing, and integrating bioinformatics applications using EMBOSS C libraries, ACD files, APIs, and third‑party software wrapping to support molecular biology analyses such as sequence analysis and data integration.


Key Features:

  • Integration with Third-Party Software: Enables incorporation of external bioinformatics applications into the EMBOSS ecosystem.
  • Extensive C Programming Libraries: Supplies extensible C libraries for building computational bioinformatics applications within EMBOSS.
  • ACD-based Customization: Supports customization of existing applications via ACD (Application Configuration Definition) files.
  • Application Interface Development: Supports the design and creation of new application interfaces for bespoke bioinformatics tools.
  • API Support: Exposes programmatic APIs for integrating and developing applications within the EMBOSS framework.
  • Wrapping and Porting Applications: Allows wrapping and porting of third-party applications into EMBOSS-compatible programs.

Scientific Applications:

  • Custom Bioinformatics Tool Development: Development and customization of bioinformatics applications tailored to molecular biology research.
  • Sequence Analysis: Support for basic sequence analysis workflows within the EMBOSS ecosystem.
  • Data Integration: Integration of multiple tools and datasets to enable complex data integration tasks.
  • Porting External Algorithms: Incorporation of external algorithms and software into EMBOSS-based analyses.

Methodology:

Leverages EMBOSS C programming libraries; employs ACD (Application Configuration Definition) files for application customization; uses programmatic APIs and wrapping/porting of third-party applications to integrate external software into EMBOSS.

Topics

Collections

Details

License:
GPL-3.0
Maturity:
Mature
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Linux, Windows, Mac
Programming Languages:
C
Added:
11/8/2015
Last Updated:
12/10/2018

Operations

Publications

Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.

Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.

Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.

Documentation

Downloads

Links