wossdata
wossdata provides components within the EMBOSS suite for developing, customizing, and integrating bioinformatics applications using EMBOSS C libraries, ACD files, APIs, and third‑party software wrapping to support molecular biology analyses such as sequence analysis and data integration.
Key Features:
- Integration with Third-Party Software: Enables incorporation of external bioinformatics applications into the EMBOSS ecosystem.
- Extensive C Programming Libraries: Supplies extensible C libraries for building computational bioinformatics applications within EMBOSS.
- ACD-based Customization: Supports customization of existing applications via ACD (Application Configuration Definition) files.
- Application Interface Development: Supports the design and creation of new application interfaces for bespoke bioinformatics tools.
- API Support: Exposes programmatic APIs for integrating and developing applications within the EMBOSS framework.
- Wrapping and Porting Applications: Allows wrapping and porting of third-party applications into EMBOSS-compatible programs.
Scientific Applications:
- Custom Bioinformatics Tool Development: Development and customization of bioinformatics applications tailored to molecular biology research.
- Sequence Analysis: Support for basic sequence analysis workflows within the EMBOSS ecosystem.
- Data Integration: Integration of multiple tools and datasets to enable complex data integration tasks.
- Porting External Algorithms: Incorporation of external algorithms and software into EMBOSS-based analyses.
Methodology:
Leverages EMBOSS C programming libraries; employs ACD (Application Configuration Definition) files for application customization; uses programmatic APIs and wrapping/porting of third-party applications to integrate external software into EMBOSS.
Topics
Collections
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- C
- Added:
- 11/8/2015
- Last Updated:
- 12/10/2018
Operations
Publications
Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.
Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.
Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.