wossparam

wossparam integrates with the EMBOSS suite to support development and integration of molecular biology applications and analyses.


Key Features:

  • EMBOSS integration: Integrates with the EMBOSS suite, enabling interoperability with its collection of over 200 integrated applications.
  • Third-party compatibility: Provides compatibility with various popular third-party software packages for bioinformatics workflows.
  • Extensible C programming libraries: Leverages EMBOSS's extensive and extensible C libraries for tool development and extension.
  • ACD-based customization: Supports ACD file development to define and customize application interfaces and parameters.
  • Application wrapping and porting: Facilitates wrapping and porting of third-party applications into the EMBOSS framework.

Scientific Applications:

  • Molecular biology analyses: Supports sequence analysis and structural biology tasks within EMBOSS-based workflows.
  • Bioinformatics workflow integration: Enables integration into complex data analysis and bioinformatics pipelines.

Methodology:

Utilizes EMBOSS's extensible C programming libraries, ACD file definitions, and mechanisms for wrapping and porting third-party applications.

Topics

Collections

Details

License:
GPL-3.0
Maturity:
Mature
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Linux, Windows, Mac
Programming Languages:
C
Added:
11/8/2015
Last Updated:
12/10/2018

Operations

Data Inputs & Outputs

Publications

Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.

Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.

Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.

Documentation

Downloads

Links