wrmXpress

wrmXpress analyzes high-content imaging datasets to quantify diverse phenotypes in parasitic and free-living nematodes and flatworms for phenotypic characterization and anthelmintic screening.


Key Features:

  • Unified framework: Processes large datasets from high-throughput and high-content imaging technologies within a single analytical framework applicable across experimental setups.
  • Phenotypic analysis capabilities: Quantifies multiple phenotypes including motility, development/size, fecundity, and feeding behaviors in nematodes and flatworms.
  • Modular architecture and extensibility: Provides a modular package that supports addition and customization of phenotypic analysis modules.
  • Anthelmintic screening utility: Supports phenotypic analyses relevant to anthelmintic screening across species such as schistosomes, filarial nematodes, and free-living model nematodes.
  • Support for collaborative research: Offers a unified analysis platform that facilitates integration of diverse phenotypic datasets for cross-study comparisons.

Scientific Applications:

  • Phenotypic characterization: Quantifies behavioral and developmental phenotypes in parasitic and free-living worms under varied experimental conditions.
  • Anthelmintic drug screening: Enables assessment of drug response phenotypes across multiple worm species for screening and comparative analyses.
  • Developmental and behavioral biology: Supports studies of growth, size, fecundity, feeding, and motility to investigate worm biology and physiology.

Methodology:

Processes large datasets generated by high-throughput and high-content imaging technologies within a modular, extensible framework to analyze motility, development/size, fecundity, and feeding behaviors in nematodes and flatworms.

Topics

Details

License:
MIT
Cost:
Free of charge
Tool Type:
library
Operating Systems:
Mac, Linux, Windows
Programming Languages:
Python
Added:
1/24/2023
Last Updated:
1/24/2023

Operations

Publications

Wheeler NJ, Gallo KJ, Rehborg EJG, Ryan KT, Chan JD, Zamanian M. wrmXpress: A modular package for high-throughput image analysis of parasitic and free-living worms. PLOS Neglected Tropical Diseases. 2022;16(11):e0010937. doi:10.1371/journal.pntd.0010937. PMID:36399491. PMCID:PMC9718391.

PMID: 36399491
PMCID: PMC9718391
Funding: - Division of Intramural Research, National Institute of Allergy and Infectious Diseases: F32 AI152347, R01 AI151171, R21 AI153545

Documentation