wrmXpress
wrmXpress analyzes high-content imaging datasets to quantify diverse phenotypes in parasitic and free-living nematodes and flatworms for phenotypic characterization and anthelmintic screening.
Key Features:
- Unified framework: Processes large datasets from high-throughput and high-content imaging technologies within a single analytical framework applicable across experimental setups.
- Phenotypic analysis capabilities: Quantifies multiple phenotypes including motility, development/size, fecundity, and feeding behaviors in nematodes and flatworms.
- Modular architecture and extensibility: Provides a modular package that supports addition and customization of phenotypic analysis modules.
- Anthelmintic screening utility: Supports phenotypic analyses relevant to anthelmintic screening across species such as schistosomes, filarial nematodes, and free-living model nematodes.
- Support for collaborative research: Offers a unified analysis platform that facilitates integration of diverse phenotypic datasets for cross-study comparisons.
Scientific Applications:
- Phenotypic characterization: Quantifies behavioral and developmental phenotypes in parasitic and free-living worms under varied experimental conditions.
- Anthelmintic drug screening: Enables assessment of drug response phenotypes across multiple worm species for screening and comparative analyses.
- Developmental and behavioral biology: Supports studies of growth, size, fecundity, feeding, and motility to investigate worm biology and physiology.
Methodology:
Processes large datasets generated by high-throughput and high-content imaging technologies within a modular, extensible framework to analyze motility, development/size, fecundity, and feeding behaviors in nematodes and flatworms.
Topics
Details
- License:
- MIT
- Cost:
- Free of charge
- Tool Type:
- library
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python
- Added:
- 1/24/2023
- Last Updated:
- 1/24/2023
Operations
Publications
Wheeler NJ, Gallo KJ, Rehborg EJG, Ryan KT, Chan JD, Zamanian M. wrmXpress: A modular package for high-throughput image analysis of parasitic and free-living worms. PLOS Neglected Tropical Diseases. 2022;16(11):e0010937. doi:10.1371/journal.pntd.0010937. PMID:36399491. PMCID:PMC9718391.