XTalkDB
XTalkDB curates literature-derived molecular crosstalk between specific pairs of signaling pathways, consolidating evidence from over 1,600 publications covering 650 distinct pathway interactions.
Key Features:
- Comprehensive Crosstalk Data: Manually curates molecular crosstalk between signaling pathways and records specific molecular components such as proteins, hormones, and microRNAs that mediate interactions.
- Species and Tissue Specificity: Documents the species and tissue contexts in which each pathway crosstalk instance is observed.
- Literature Coverage: Aggregates evidence from over 1,600 publications encompassing 650 distinct pathway interactions.
Scientific Applications:
- Pathway Analysis: Enables investigation of how signaling pathways interact at a molecular level to inform studies of biological processes and disease mechanisms.
- Drug Discovery and Development: Provides curated crosstalk points that can inform therapeutic targeting of pathway interactions.
- Comparative Biology Studies: Supports comparative analyses across species using species-specific crosstalk annotations.
Methodology:
Systematic manual literature curation by reviewing over 1,600 publications to extract and record curated information on pathway crosstalk.
Topics
Details
- License:
- CC-BY-SA-4.0
- Tool Type:
- web application
- Programming Languages:
- JavaScript, SQL
- Added:
- 5/25/2018
- Last Updated:
- 12/10/2018
Operations
Publications
Sam SA, Teel J, Tegge AN, Bharadwaj A, Murali T. XTalkDB: a database of signaling pathway crosstalk. Nucleic Acids Research. 2016;45(D1):D432-D439. doi:10.1093/nar/gkw1037. PMID:27899583. PMCID:PMC5210533.
Documentation
Downloads
- Biological datahttp://www.xtalkdb.org/download