XTalkDB

XTalkDB curates literature-derived molecular crosstalk between specific pairs of signaling pathways, consolidating evidence from over 1,600 publications covering 650 distinct pathway interactions.


Key Features:

  • Comprehensive Crosstalk Data: Manually curates molecular crosstalk between signaling pathways and records specific molecular components such as proteins, hormones, and microRNAs that mediate interactions.
  • Species and Tissue Specificity: Documents the species and tissue contexts in which each pathway crosstalk instance is observed.
  • Literature Coverage: Aggregates evidence from over 1,600 publications encompassing 650 distinct pathway interactions.

Scientific Applications:

  • Pathway Analysis: Enables investigation of how signaling pathways interact at a molecular level to inform studies of biological processes and disease mechanisms.
  • Drug Discovery and Development: Provides curated crosstalk points that can inform therapeutic targeting of pathway interactions.
  • Comparative Biology Studies: Supports comparative analyses across species using species-specific crosstalk annotations.

Methodology:

Systematic manual literature curation by reviewing over 1,600 publications to extract and record curated information on pathway crosstalk.

Topics

Details

License:
CC-BY-SA-4.0
Tool Type:
web application
Programming Languages:
JavaScript, SQL
Added:
5/25/2018
Last Updated:
12/10/2018

Operations

Publications

Sam SA, Teel J, Tegge AN, Bharadwaj A, Murali T. XTalkDB: a database of signaling pathway crosstalk. Nucleic Acids Research. 2016;45(D1):D432-D439. doi:10.1093/nar/gkw1037. PMID:27899583. PMCID:PMC5210533.

Documentation

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