Yersiniomics

Yersiniomics centralizes curated genomic, transcriptomic, and proteomic datasets and provides analysis and visualization capabilities for multi-omics studies of the genus Yersinia.

Key Features:

• Curated Multi-Omics Database: Contains 200 genomic, 317 transcriptomic, and 62 proteomic datasets covering diverse Yersinia species.
• Integrated Browsers and Viewers: Provides genomic, transcriptomic, and proteomic browsers, a genome viewer, and a heatmap viewer for experimental conditions and gene expression visualization.
• Linkage to External Databases: Links genes to GenBank, KEGG, UniProt, InterPro, IntAct, and STRING, and connects experiments to GEO, ENA, and PRIDE.

Scientific Applications:

• Comparative Omics: Enables comparative analyses across Yersinia strains and experimental conditions using genomic, transcriptomic, and proteomic data.
• Pathogenesis and Disease Study: Supports investigation of pathogenic Yersinia species involved in plague, enteritis, Far East scarlet-like fever (FESLF), and enteric redmouth disease.
• Biomarker and Therapeutic Research: Facilitates identification of genes and expression patterns relevant to diagnostics and therapeutic strategy development.

Methodology:

Integrates and curates genomic, transcriptomic, and proteomic datasets and provides direct links to GenBank, KEGG, UniProt, InterPro, IntAct, STRING, GEO, ENA, and PRIDE.