Yevis-web
Yevis-web registers and validates bioinformatics workflows for community-driven sharing to improve portability and reusability of analysis methods.
Key Features:
- Automated Validation and Testing: Performs automated validation and testing of workflows against predefined reusability criteria prior to publication.
- Integration with GitHub and Zenodo: Integrates with GitHub for version control and submission and with Zenodo for archival and persistent identifiers.
- Workflow Registration via Pull Requests: Accepts workflow registrations through GitHub pull requests to trigger validation and testing before registry inclusion.
- Community-Focused Registry Building: Supports construction of a community-based registry that aggregates validated workflows meeting reusability standards.
Scientific Applications:
- Reproducibility: Enhances reproducibility by publishing validated and tested workflows with archival records and persistent identifiers.
- Workflow Sharing and Reuse: Enables dissemination and reuse of portable bioinformatics analysis methods across research communities.
Methodology:
Automated validation and testing of workflows against defined reusability requirements, workflow registration via GitHub pull requests, and archival on Zenodo.
Topics
Details
- License:
- Apache-2.0
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Added:
- 10/3/2022
- Last Updated:
- 11/24/2024
Operations
Publications
Suetake H, Fukusato T, Igarashi T, Ohta T. Workflow sharing with automated metadata validation and test execution to improve the reusability of published workflows. Unknown Journal. 2022. doi:10.1101/2022.07.08.499265.
Documentation
Downloads
Related Tools
yevis-cli
Relation: uses