ZENBU-Reports
ZENBU-Reports visualizes and disseminates genome-scale genomic datasets by creating interactive scientific web portals for publication and collaborative research.
Key Features:
- Data Storage and Security: Securely stores uploaded genomic datasets and manages access control for collaborative sharing.
- Interactive Visualization Elements: Generates interactive scientific visualizations suitable for supplementary websites, publications, and presentations.
- Interactive Portal Generation: Constructs interactive scientific web portals to disseminate genome-wide datasets and associated visualizations.
- Lifecycle Support: Maintains dataset accessibility and interpretability post-publication across the research lifecycle.
- Scalability: Handles massive genome-wide and genome-scale datasets produced by consortia and large projects.
Scientific Applications:
- Publication Supplementation: Hosting interactive supplementary websites and figures accompanying scientific publications.
- Consortia and Collaboration: Sharing and presenting genome-wide datasets from international consortia, intra-organizational collaborations, and individual laboratories.
- Data Exploration and Presentation: Enabling interactive exploration of large-scale genomic data in presentations and research projects.
Methodology:
Users upload genomic datasets into a secure storage environment where the platform stores and manages the data, constructs interactive visualizations, and generates interactive scientific web portals.
Topics
Details
- License:
- CC-BY-4.0
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- JavaScript, C++, Perl
- Added:
- 1/30/2024
- Last Updated:
- 11/24/2024
Operations
Publications
Severin J, Agrawal S, Ramilowski JA, Deviatiiarov R, Shin JW, Carninci P, de Hoon M. ZENBU-Reports: a graphical web-portal builder for interactive visualization and dissemination of genome-scale data. NAR Genomics and Bioinformatics. 2023;5(3). doi:10.1093/nargab/lqad075. PMID:37608799. PMCID:PMC10440783.