ZeroCostDL4Mic

ZeroCostDL4Mic provides deep learning workflows for microscopy image analysis, enabling training and deployment of models for segmentation, detection, denoising, restoration, resolution enhancement, and image-to-image translation.


Key Features:

  • Cloud-Based Computing: Integration with Google Colab providing access to GPU-accelerated computing resources.
  • Supported Imaging Tasks: Includes models and tools for segmentation, detection, denoising, restoration, resolution enhancement, and image-to-image translation for microscopy data.
  • Model Training and Deployment: Provides workflows for training deep learning models on microscopy datasets and deploying trained models for inference.
  • Architecture Selection and Execution: Enables selection and execution of appropriate deep learning architectures for specific microscopy imaging tasks.

Scientific Applications:

  • Cellular Structure Segmentation: Segmentation of cellular structures in microscopy images for quantitative morphology and spatial analysis.
  • Protein Detection: Detection of proteins and subcellular features in microscopy datasets.
  • Denoising and Restoration: Denoising and image restoration to improve image quality and effective resolution in microscopy images.

Methodology:

Integration with Google Colab infrastructure; upload microscopy datasets, select appropriate deep learning architectures, train models, and execute models for deployment.

Topics

Details

License:
MIT
Added:
1/18/2021
Last Updated:
3/22/2021

Operations

Publications

Chamier Lv, Laine RF, Jukkala J, Spahn C, Krentzel D, Nehme E, Lerche M, Hernández-Pérez S, Mattila PK, Karinou E, Holden S, Solak AC, Krull A, Buchholz T, Jones ML, Royer LA, Leterrier C, Shechtman Y, Jug F, Heilemann M, Jacquemet G, Henriques R. ZeroCostDL4Mic: an open platform to use Deep-Learning in Microscopy. Unknown Journal. 2020. doi:10.1101/2020.03.20.000133.

Links