AliView

AliView is an alignment viewer and editor that supports various formats commonly used for phylogenetic datasets. It can handle alignments of unlimited size and provides an intuitive graphical interface for inspecting, sorting, merging, and realigning sequences. AliView is open-source and cross-platform software that is extensively tested on Linux, Mac OS X, and Windows systems.

Topic

Sequence alignment visualization and manipulation

Detail

  • Operation: sequence alignment;sequence editing;sequence filtering;sequence merging;sequence sorting;sequence highlighting;sequence annotation;alignment visualization

  • Software interface: Graphical user interface

  • Language: Java

  • License: GNU General Public License v3

  • Cost: Free

  • Version name: -

  • Credit: The Swedish Research Council for Environment, Agricultural Sciences and Spatial Planning (Formas).

  • Input: -

  • Output: -

  • Contact: http://ormbunkar.se/aliview/#CONTACT

  • Collection: -

  • Maturity: Stable

Publications

  • AliView: a fast and lightweight alignment viewer and editor for large datasets.
  • Larsson A. AliView: a fast and lightweight alignment viewer and editor for large datasets. AliView: a fast and lightweight alignment viewer and editor for large datasets. 2014; 30:3276-8. doi: 10.1093/bioinformatics/btu531
  • https://doi.org/10.1093/bioinformatics/btu531
  • PMID: 25095880
  • PMC: PMC4221126

Download and documentation

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