FSL-FMRIB

FSL (the FMRIB Software Library) contains software tools for the analysis of functional magnetic resonance imaging (FMRI), Diffusion tensor imaging (DTI), and magnetic resonance imaging (MRI) data. The FSL packages can also run on GPUs.
The FSL package includes tools for
1) Functional MRI:
    FEAT
    MELODIC
    FABBER
    BASIL
    VERBENA
2) Structural MRI:
    BET
    FAST
    FIRST
    FLIRT & FNIRT
    FSLVBM
    SIENA & SIENAX
    MIST
    BIANCA
    MSM
    fsl_anat
3) GLM, Stats:
    GLM general advice     Randomise     PALM     Cluster     FDR     Dual Regression     Mm     FLOBS
4) Misc:
    FSLeyes
    FSLView
    Fslutils
    Atlases
    Atlasquery
    SUSAN
    FUGUE
    MCFLIRT
    Miscvis
    POSSUM
    BayCEST
    ICA_PNM
    FSL-MRS

Topic

NMR;Medical imaging;MRI;Metabolomics;Small molecules

Detail

Publications

  • Advances in functional and structural MR image analysis and implementation as FSL
  • Smith SM, Jenkinson M, Woolrich MW, Beckmann CF, Behrens TE, Johansen-Berg H, Bannister PR, De Luca M, Drobnjak I, Flitney DE, Niazy RK, Saunders J, Vickers J, Zhang Y, De Stefano N, Brady JM, Matthews PM. Advances in functional and structural MR image analysis and implementation as FSL. Neuroimage. 2004;23 Suppl 1:S208-19. doi: 10.1016/j.neuroimage.2004.07.051. PMID: 15501092.
  • https://doi.org/10.1016/j.neuroimage.2004.07.051
  • PMID: 15501092
  • PMC: -
  • Bayesian analysis of neuroimaging data in FSL
  • Woolrich MW, Jbabdi S, Patenaude B, Chappell M, Makni S, Behrens T, Beckmann C, Jenkinson M, Smith SM. Bayesian analysis of neuroimaging data in FSL. Neuroimage. 2009 Mar;45(1 Suppl):S173-86. doi: 10.1016/j.neuroimage.2008.10.055. Epub 2008 Nov 13. PMID: 19059349.
  • https://doi.org/10.1016/j.neuroimage.2008.10.055
  • PMID: 19059349
  • PMC: -

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