IcyTree

IcyTree is a web-based tool to visualize phylogenetic trees and networks using various visualization styles. IcyTree also includes lineages-through-time and Skyline plots.

Topic

Phylogenetics;Molecular interactions, pathways and networks;Data visualisation

Detail

  • Operation: Phylogenetic tree visualisation;Pathway or network visualisation

  • Software interface: Web user interface

  • Language: JavaScript

  • License: GNU General Public License v3

  • Cost: Free

  • Version name: -

  • Credit: Marsden grant from the Royal Society of New Zealand.

  • Input: Newick,NEXUS,PhyloXML, NeXML

  • Output: Scalable Vector Graphics (SVG), PNG, JPEG

  • Contact: Timothy G Vaughan tgvaughan@gmail.com

  • Collection: -

  • Maturity: Stable

Publications

  • IcyTree: rapid browser-based visualization for phylogenetic trees and networks.
  • Vaughan TG. IcyTree: rapid browser-based visualization for phylogenetic trees and networks. Bioinformatics. 2017 Aug 1;33(15):2392-2394. doi: 10.1093/bioinformatics/btx155. PMID: 28407035; PMCID: PMC5860111.
  • https://doi.org/10.1093/bioinformatics/btx155
  • PMID: 28407035
  • PMC: PMC5860111

Download and documentation

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