ELIXIR-CINECA-HPC
HPC@CINECA provides high-performance computing resources for Elixir members to support large-scale processing and analysis of High-Throughput Sequencing (HTS) data. The service operates on a continuous open-call basis, with approved projects receiving a 1-year allocation that includes 50,000 CPU hours and 1 TB of storage by default, with the possibility to request additional resources. Proposals are evaluated by a scientific committee, with feedback typically provided within seven working days.
From 2025, a pilot program enables the analysis of GDPR-protected sensitive data for up to two projects per year (maximum one per user or institution, first-come first-served). Projects involving non-sensitive data are unlimited and may be submitted at any time.
Topics
Details
- License:
- Not licensed
- Maturity:
- Legacy
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Linux
- Programming Languages:
- Bash
- Added:
- 1/30/2026
- Last Updated:
- 1/30/2026
Operations
Publications
Documentation
Links
Related Tools
MAJIQ-SPEL
Relation: uses
alphafold2
Relation: uses
annovar
Relation: uses
bcftools
Relation: uses
bedtools
Relation: uses
biopython
Relation: uses
blast
Relation: uses
bowtie
Relation: uses
bowtie2
Relation: uses
bwa-mem2
Relation: uses
cufflinks
Relation: uses
cutadapt
Relation: uses
deseq2
Relation: uses
fastqc
Relation: uses
freebayes
Relation: uses
gatk
Relation: uses
hisat2
Relation: uses
hpc-reditools
Relation: uses
htseqcount
Relation: uses
jellyfish
Relation: uses
kraken2
Relation: uses
limma
Relation: uses
multiqc
Relation: uses
plink
Relation: uses
r
Relation: uses
reditools
Relation: uses
samtools
Relation: uses
seqtk
Relation: uses
snakemake
Relation: uses
sra
Relation: uses
star
Relation: uses
stringtie
Relation: uses
tabix
Relation: uses
tophat2
Relation: uses
trimmomatic
Relation: uses
varscan
Relation: uses
vcftools
Relation: uses
vep
Relation: uses
wgsim
Relation: uses