3Omics

3Omics is a web tool to integrate and visualize human transcriptomic, metabolomic, and proteomic data. The 3Omics include functions for generating phenotypes, KEGG/HumanCyc pathway and Gene Ontology (GO) enrichment, network correlation, and coexpression analysis. The site also provides a converter to convert names to IDs.

Topic

Systems biology;Transcriptomics;Human biology;Proteomics;Metabolomics;Data visualisation;Data visualisation

Detail

  • Operation: Sequence analysis;Genome visualisation

  • Software interface: Web user interface

  • Language: PHP, Perl

  • License: Web application

  • Cost: Free

  • Version name: -

  • Credit: Taiwan National Science Council.

  • Input: CSV

  • Output: SVG, PNG, SIF

  • Contact: Tien-Chueh Kuo cot@cmdm.csie.ntu.edu.tw, Tze-Feng Tian newtonstudio@gmail.com, Yufeng Jane Tseng yjtseng@csie.ntu.edu.tw

  • Collection: -

  • Maturity: -

Publications

  • 3Omics: a web-based systems biology tool for analysis, integration and visualization of human transcriptomic, proteomic and metabolomic data.
  • Kuo TC, Tian TF, Tseng YJ. 3Omics: a web-based systems biology tool for analysis, integration and visualization of human transcriptomic, proteomic and metabolomic data. BMC Syst Biol. 2013 Jul 23;7:64. doi: 10.1186/1752-0509-7-64. PMID: 23875761; PMCID: PMC3723580.
  • https://doi.org/10.1186/1752-0509-7-64
  • PMID: 23875761
  • PMC: PMC3723580

Download and documentation

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