3dLOGO

3dLOGO is a web-based service to identify conserved three-dimensional (3D) substructures in protein sequences from Protein Data Bank (PDB).

Topic

Protein structural motifs and surfaces;Proteins;Proteomics

Detail

  • Operation: Sequence alignment analysis (conservation);Protein structural motif recognition;Protein structure analysis;Protein sequence analysis;Protein identification

  • Software interface: Web user interface

  • Language: -

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: Telethon, AIRC.

  • Input: -

  • Output: -

  • Contact: Allegra Via allegra.via@uniroma2.it, Manuela Helmer-Citterich citterich@uniroma2.it

  • Collection: -

  • Maturity: -

Publications

  • 3dLOGO: a web server for the identification, analysis and use of conserved protein substructures.
  • Via A, Peluso D, Gherardini PF, de Rinaldis E, Colombo T, Ausiello G, Helmer-Citterich M. 3dLOGO: a web server for the identification, analysis and use of conserved protein substructures. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W416-9. doi: 10.1093/nar/gkm228. Epub 2007 May 8. PMID: 17488847; PMCID: PMC1933223.
  • https://doi.org/10.1093/nar/gkm228
  • PMID: 17488847
  • PMC: PMC1933223

Download and documentation

    Currently not available or not maintained.

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