ABS

ABS is a web-based resource that contains experimentally identified and predicted, annotated transcription factor binding sites from orthologous promoters in human, rat, chicken, and mouse genome sequences. The ABS includes a function to generate artificial datasets.

Topic

Transcription factors and regulatory sites

Detail

  • Operation: Query and retrieval

  • Software interface: Database portal

  • Language: -

  • License: GNU General Public License v3

  • Cost: Free

  • Version name: 1.0

  • Credit: Ministerio de Ciencia y Tecnología (Spain), predoctoral fellowship from Instituto Nacional de Bioinformática (Spain), Plan Nacional de I+D, Ministerio de Ciencia y Tecnología (Spain), FBBVA Bioinformatics grant.

  • Input: -

  • Output: -

  • Contact: eblanco@imim.es

  • Collection: -

  • Maturity: Stable

Publications

  • ABS: a database of Annotated regulatory Binding Sites from orthologous promoters.
  • Blanco E, Farré D, Albà MM, Messeguer X, Guigó R. ABS: a database of Annotated regulatory Binding Sites from orthologous promoters. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D63-7. doi: 10.1093/nar/gkj116. PMID: 16381947; PMCID: PMC1347478.
  • https://doi.org/10.1093/nar/gkj116
  • PMID: 16381947
  • PMC: PMC1347478

Download and documentation

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