ADaCGH2

ADaCGH2 is a BioConductor package that parallelizes segmentation algorithms for analyzing large-scale genomic DNA copy number alteration datasets with millions of probes and thousands of subjects. It uses ff objects for reading and data storage and achieves significant speedups of 25-40 times on a 64-cores machine.

Topic

DNA structural variation

Detail

  • Operation: Copy number estimation

  • Software interface: Command-line user interface;Library

  • Language: R

  • License: GNU General Public License v3

  • Cost: Free

  • Version name: 2.38.0

  • Credit: Spanish MINECO

  • Input: -

  • Output: -

  • Contact: rdiaz02@gmail.com

  • Collection: -

  • Maturity: Mature

Publications

  • ADaCGH2: parallelized analysis of (big) CNA data.
  • Diaz-Uriarte R. ADaCGH2: parallelized analysis of (big) CNA data. ADaCGH2: parallelized analysis of (big) CNA data. 2014; 30:1759-61. doi: 10.1093/bioinformatics/btu099
  • https://doi.org/10.1093/bioinformatics/btu099
  • PMID: 24532724
  • PMC: -

Download and documentation

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