AGRIS

AGRIS (The Arabidopsis Gene Regulatory Information Server) is an exhaustive database of the dicotyledonous plant Arabidopsis thaliana experimentally verified cis-regulatory and transcription factor data, including their interactions.

Topic

Molecular interactions, pathways and networks;Transcription factors and regulatory sites;Plant biology;Gene expression;Gene regulation

Detail

  • Operation: Pathway or network prediction;Gene regulatory network analysis;cis-regulatory element prediction;Regulatory element prediction

  • Software interface: Database portal

  • Language: -

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: -

  • Input: -

  • Output: -

  • Contact: grotewold.agris@gmail.com

  • Collection: -

  • Maturity: Mature

Publications

  • AGRIS: the Arabidopsis Gene Regulatory Information Server, an update
  • Yilmaz A, Mejia-Guerra MK, Kurz K, Liang X, Welch L, Grotewold E. AGRIS: the Arabidopsis Gene Regulatory Information Server, an update. Nucleic Acids Res. 2011 Jan;39(Database issue):D1118-22. doi: 10.1093/nar/gkq1120. Epub 2010 Nov 8. PMID: 21059685; PMCID: PMC3013708.
  • https://doi.org/10.1093/nar/gkq1120
  • PMID: 21059685
  • PMC: PMC3013708
  • AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks
  • Palaniswamy SK, James S, Sun H, Lamb RS, Davuluri RV, Grotewold E. AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks. Plant Physiol. 2006 Mar;140(3):818-29. doi: 10.1104/pp.105.072280. PMID: 16524982; PMCID: PMC1400579.
  • https://doi.org/10.1104/pp.105.072280
  • PMID: 16524982
  • PMC: PMC1400579
  • AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
  • Davuluri RV, Sun H, Palaniswamy SK, Matthews N, Molina C, Kurtz M, Grotewold E. AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors. BMC Bioinformatics. 2003 Jun 23;4:25. doi: 10.1186/1471-2105-4-25. Epub 2003 Jun 23. PMID: 12820902; PMCID: PMC166152.
  • https://doi.org/10.1186/1471-2105-4-25
  • PMID: 12820902
  • PMC: PMC166152
  • The word landscape of the non-coding segments of the Arabidopsis thaliana genome
  • Lichtenberg J, Yilmaz A, Welch JD, Kurz K, Liang X, Drews F, Ecker K, Lee SS, Geisler M, Grotewold E, Welch LR. The word landscape of the non-coding segments of the Arabidopsis thaliana genome. BMC Genomics. 2009 Oct 8;10:463. doi: 10.1186/1471-2164-10-463. PMID: 19814816; PMCID: PMC2770528.
  • https://doi.org/10.1186/1471-2164-10-463
  • PMID: 19814816
  • PMC: PMC2770528
  • Genome wide analysis of Arabidopsis core promoters
  • Molina C, Grotewold E. Genome wide analysis of Arabidopsis core promoters. BMC Genomics. 2005 Feb 25;6:25. doi: 10.1186/1471-2164-6-25. PMID: 15733318; PMCID: PMC554773.
  • https://doi.org/10.1186/1471-2164-6-25
  • PMID: 15733318
  • PMC: PMC554773

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