AMP0

AMP0 is a targeted antimicrobial peptide activity predictor that uses zero and few shot machine learning to generate targeted predictions. The proposed predictor takes the sequence of a peptide and any N/C-termini modifications together with the genomic sequence of a microbial species to generate targeted predictions. Cross-validation results show that the proposed scheme is particularly effective for targeted antimicrobial prediction in comparison to existing approaches and can be used for screening potential antimicrobial peptides in a targeted manner with only a small number of training examples for novel species.

Topic

Small molecules;Machine learning;Medical informatics;Proteomics

Detail

  • Operation: Antimicrobial resistance prediction;Peptide identification;Virtual screening

  • Software interface: Web user interface

  • Language: Python

  • License: -

  • Cost: -

  • Version name: -

  • Credit: Higher Education Commission, Pakistan.

  • Input: -

  • Output: -

  • Contact: -

  • Collection: -

  • Maturity: -

Publications

  • AMP<sub>0</sub>: Species-Specific Prediction of Anti-microbial Peptides Using Zero and Few Shot Learning.
  • Gull S and Minhas F. AMP<sub>0</sub>: Species-Specific Prediction of Anti-microbial Peptides Using Zero and Few Shot Learning. AMP<sub>0</sub>: Species-Specific Prediction of Anti-microbial Peptides Using Zero and Few Shot Learning. 2022; 19:275-283. doi: 10.1109/TCBB.2020.2999399
  • https://doi.org/10.1109/TCBB.2020.2999399
  • PMID: 32750857
  • PMC: -

Download and documentation

    Currently not available or not maintained.

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