AdmixTools

AdmixTools is a software tool package for the analysis of genetic admixture. The AdmixTools package includes F4-ratio estimation, D-statistics, roll-off, and admixture graph fitting in qp3Pop, convertf, qpF4Ratio, qpDstat , rolloff, and qpBound tools.

Topic

Population genetics

Detail

  • Operation: Genetic variation analysis

  • Software interface: Command-line user interface

  • Language: R;C++;Perl;C

  • License: Other

  • Cost: Free

  • Version name: 7.0.2

  • Credit: U.S. National Science Foundation (NSF) HOMINID grant, National Institutes of Health (NIH).

  • Input: -

  • Output: -

  • Contact: Nick Patterson nickp@broadinstitute.org

  • Collection: -

  • Maturity: Mature

Publications

  • Ancient admixture in human history.
  • Patterson N, Moorjani P, Luo Y, Mallick S, Rohland N, Zhan Y, Genschoreck T, Webster T, Reich D. Ancient admixture in human history. Genetics. 2012 Nov;192(3):1065-93. doi: 10.1534/genetics.112.145037. Epub 2012 Sep 7. PMID: 22960212; PMCID: PMC3522152.
  • https://doi.org/10.1534/genetics.112.145037
  • PMID: 22960212
  • PMC: PMC3522152

Download and documentation

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