Admixem

Admixem is a software tool to simulate admixed populations. Although specifically implemented to simulate admixed populations, it works well with general populations. Users can define fitness, mating preference probabilities, genomic landscapes, and model neutral, single nucleotide polymorphisms (SNPs).

Topic

Population genetics;Phylogeny

Detail

  • Operation: Molecular dynamics simulation

  • Software interface: Command-line user interface

  • Language: PHP;R;C++

  • License: -

  • Cost: Free

  • Version name: 1.0.2.3

  • Credit: National Science Foundation (NSF)

  • Input: -

  • Output: -

  • Contact: Rongfeng Cui rcui@age.mpg.de

  • Collection: -

  • Maturity: -

Publications

  • Admix'em: a flexible framework for forward-time simulations of hybrid populations with selection and mate choice.
  • Cui R, Schumer M, Rosenthal GG. Admix'em: a flexible framework for forward-time simulations of hybrid populations with selection and mate choice. Bioinformatics. 2016 Apr 1;32(7):1103-5. doi: 10.1093/bioinformatics/btv700. Epub 2015 Nov 28. PMID: 26615212.
  • https://doi.org/10.1093/bioinformatics/btv700
  • PMID: 26615212
  • PMC: -

Download and documentation

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