Auto-Rickshaw

Auto-Rickshaw is a web-based software tool to determine crystal structures automatically from X-ray data. The Auto-Rickshaw algorithm uses a combination of molecular replacement and single-wavelength anomalous diffraction phasing and uses AlphaFold Protein Structure Database.

Topic

X-ray diffraction

Detail

  • Operation: Protein modelling

  • Software interface: Web user interface

  • Language: -

  • License: Other

  • Cost: Free for academic use

  • Version name: 1.08

  • Credit: The EC-funded BIOXHIT project

  • Input: -

  • Output: -

  • Contact: Victor S. Lamzin vlamzin@embl-hamburg.de, Santosh Panjikar panjikar AT embl-hamburg.de, Manfred S. Weiss msweiss AT embl-hamburg.de

  • Collection: -

  • Maturity: Mature

Publications

  • Auto-rickshaw: an automated crystal structure determination platform as an efficient tool for the validation of an X-ray diffraction experiment
  • Panjikar S, Parthasarathy V, Lamzin VS, Weiss MS, Tucker PA. Auto-rickshaw: an automated crystal structure determination platform as an efficient tool for the validation of an X-ray diffraction experiment. Acta Crystallogr D Biol Crystallogr. 2005 Apr;61(Pt 4):449-57. doi: 10.1107/S0907444905001307. Epub 2005 Mar 24. PMID: 15805600.
  • https://doi.org/10.1107/S0907444905001307
  • PMID: 15805600
  • PMC: -
  • On the combination of molecular replacement and single-wavelength anomalous diffraction phasing for automated structure determination.
  • Panjikar S, Parthasarathy V, Lamzin VS, Weiss MS, Tucker PA. On the combination of molecular replacement and single-wavelength anomalous diffraction phasing for automated structure determination. Acta Crystallogr D Biol Crystallogr. 2009 Oct;65(Pt 10):1089-97. doi: 10.1107/S0907444909029643. Epub 2009 Sep 16. PMID: 19770506; PMCID: PMC2756167.
  • https://doi.org/10.1107/S0907444909029643
  • PMID: 19770506
  • PMC: PMC2756167

Download and documentation

< Back to DB search