AutoGRAPH

AutoGRAPH is a web server for multi-species comparative genomics analysis. It can automatically identify conserved segments and breakpoint regions, assess marker/gene order conservation between organisms, construct synteny maps for two to three species, and generate high-quality interactive displays to identify chromosomal rearrangements. The tool can also integrate and compare multiple types of genomic resources for a single species, making it versatile for comparative genomics analysis.

Topic

Mapping;DNA;Comparative genomics

Detail

  • Operation: Genome comparison

  • Software interface: Web service

  • Language: PHP;Perl;SQL;C

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: The French Centre National de la Recherche Scientifique (CNRS), the Conseil Regional de Bretagne

  • Input: -

  • Output: -

  • Contact: Thomas Derrien toma.derrien@gmail.com

  • Collection: -

  • Maturity: -

Publications

  • AutoGRAPH: an interactive web server for automating and visualizing comparative genome maps.
  • Derrien T, et al. AutoGRAPH: an interactive web server for automating and visualizing comparative genome maps. AutoGRAPH: an interactive web server for automating and visualizing comparative genome maps. 2007; 23:498-9. doi: 10.1093/bioinformatics/btl618
  • https://doi.org/10.1093/bioinformatics/btl618
  • PMID: 17145741
  • PMC: -

Download and documentation

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