BEL2ABM

BEL2ABM is a software tool that allows for the production of continuous, dynamic, executable agent-based models from Biological Expression Language templates. These models support the generation of mechanistic hypotheses and are more flexible in encoding temporality than static models.

Topic

Data management;Experimental design and studies;Ontology and terminology

Detail

  • Operation: Formatting

  • Software interface: Command-line user interface

  • Language: Java, NetLogo

  • License: Apache License 2.0

  • Cost: Free

  • Version name: -

  • Credit: The B-IT Foundation.

  • Input: -

  • Output: -

  • Contact: martin.hofmann-apitius@scai.fraunhofer.de

  • Collection: -

  • Maturity: -

Publications

  • BEL2ABM: agent-based simulation of static models in Biological Expression Language.
  • Gündel M, et al. BEL2ABM: agent-based simulation of static models in Biological Expression Language. BEL2ABM: agent-based simulation of static models in Biological Expression Language. 2018; 34:2316-2318. doi: 10.1093/bioinformatics/bty107
  • https://doi.org/10.1093/bioinformatics/bty107
  • PMID: 29949955
  • PMC: PMC6022644

Download and documentation

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