BaCelLo

BaCelLo is a web-based tool to predict secretory pathways and localizations of cytoplasmic, nuclear, mitochondrial, and chloroplast proteins. The BaCello algorithm uses a Support Vector Machine (SVM) together with a decision tree.

Topic

Bioinformatics;Protein targeting and localisation;Model organisms;Plants;Model organisms

Detail

  • Operation: Protein subcellular localisation prediction

  • Software interface: Web user interface

  • Language: -

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: PNR 2001-2003 for a project on Bioinformatics for Genomics and Proteomics, a FIRB 2003 LIBI—International Laboratory of Bioinformatics and the support to the Bologna node of the Biosapiens Network of Excellence project within the European Union’s VI Framework Programme, MIUR for a grant on Proteases.

  • Input: FASTA

  • Output: -

  • Contact: Rita Casadio casadio@alma.unibo.it, Andrea Pierleoni andrea@biocomp.unibo.it, Pier Luigi Martelli gigi@biocomp.unibo.it, Piero Fariselli piero@biocomp.unibo.it

  • Collection: -

  • Maturity: -

Publications

  • BaCelLo: a balanced subcellular localization predictor
  • Pierleoni A, Martelli PL, Fariselli P, Casadio R. BaCelLo: a balanced subcellular localization predictor. Bioinformatics. 2006 Jul 15;22(14):e408-16. doi: 10.1093/bioinformatics/btl222. PMID: 16873501.
  • https://doi.org/10.1093/bioinformatics/btl222
  • PMID: 16873501
  • PMC: -

Download and documentation

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