BetAware

BetAware is a software tool that detects trans-membrane beta-barrel proteins and predicts the trans-membrane topology.

Topic

Bioinformatics;Structure prediction;Protein secondary structure

Detail

  • Operation: Protein secondary structure prediction;Transmembrane protein prediction

  • Software interface: Command-line user interface;Web user interface

  • Language: Python

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: LIBI-Laboratorio Internazionale di BioInformatica, Biosapiens Network of Excellence project, a grant of the European Unions VI Framework Programme.

  • Input: -

  • Output: -

  • Contact: Castrense Savojardo savojard@biocomp.unibo.it, Piero Fariselli piero.fariselli@unibo.it, Pier Luigi Martelli gigi@biocomp.unibo.it, Rita Casadio casadio@biocomp.unibo.it

  • Collection: -

  • Maturity: -

Publications

  • BETAWARE: a machine-learning tool to detect and predict transmembrane beta-barrel proteins in prokaryotes
  • Savojardo C, Fariselli P, Casadio R. BETAWARE: a machine-learning tool to detect and predict transmembrane beta-barrel proteins in prokaryotes. Bioinformatics. 2013 Feb 15;29(4):504-5. doi: 10.1093/bioinformatics/bts728. Epub 2013 Jan 6. PMID: 23297037.
  • https://doi.org/10.1093/bioinformatics/bts728
  • PMID: 23297037
  • PMC: -
  • Grammatical-Restrained Hidden Conditional Random Fields for Bioinformatics applications
  • Fariselli P, Savojardo C, Martelli PL, Casadio R. Grammatical-Restrained Hidden Conditional Random Fields for Bioinformatics applications. Algorithms Mol Biol. 2009 Oct 22;4:13. doi: 10.1186/1748-7188-4-13. PMID: 19849839; PMCID: PMC2776008.
  • https://doi.org/10.1186/1748-7188-4-13
  • PMID: 19849839
  • PMC: PMC2776008

Download and documentation

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