BioCIDER

BioCIDER is an open-source platform designed to help users discover relevant bioinformatics resources through a contextualization index. Similar to online shopping recommendations, it provides a service to collect and index biological resources such as databases, software tools, and training materials.

Topic

Biological Data Analysis

Detail

  • Operation: Resource discovery;Contextualization indexing;Collection and indexing of biological resources

  • Software interface: Command-line user inteface

  • Language: HTML, CSS, JavaScript

  • License: MIT License

  • Cost: Free

  • Version name: -

  • Credit: ELIXIR Hub, The European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, UK

  • Input: -

  • Output: -

  • Contact: Carlos Horro carlos.horro@earlham.ac.uk, Manuel Corpas manuel@repositive.io

  • Collection: BioJS

  • Maturity: Stable

Publications

  • BioCIDER: a Contextualisation InDEx for biological Resources discovery.
  • Horro C, et al. BioCIDER: a Contextualisation InDEx for biological Resources discovery. BioCIDER: a Contextualisation InDEx for biological Resources discovery. 2017; 33:2607-2608. doi: 10.1093/bioinformatics/btx213
  • https://doi.org/10.1093/bioinformatics/btx213
  • PMID: 28407033
  • PMC: PMC5870719

Download and documentation

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