BioNERO
BioNERO is an R package designed for performing various tasks related to network analysis in bioinformatics. It integrates multiple steps in network analysis workflows, such as expression data preprocessing, gene coexpression and regulatory network inference, functional analyses, and cross-species network comparisons. This package provides a comprehensive solution for network analysis by offering a range of advanced tools and techniques. With its intuitive interface and easy integration into existing systems biology pipelines, BioNERO makes it easier to analyze complex biological networks.
Topic
Molecular interactions, pathways and networks;Gene expression;Workflows
Detail
Operation: Weighted correlation network analysis;Gene regulatory network analysis;Expression correlation analysis;Network visualisation
Software interface: Library
Language: R
License: The GNU General Public License v3.0
Cost: Free
Version name: 1.10.0
Credit: -
Input: -
Output: -
Contact: Fabricio Almeida-Silva fabricio_almeidasilva@hotmail.com
Collection: -
Maturity: Stable
Publications
- BioNERO: an all-in-one R/Bioconductor package for comprehensive and easy biological network reconstruction
- Almeida-Silva, F.; Venancio, T. M. BioNERO: an all-in-one R/Bioconductor package for comprehensive and easy biological network reconstruction. bioRxiv 2021. doi: 10.1101/2021.04.10.439287
- https://doi.org/10.1007/s10142-021-00821-9
- PMID: 34787733
- PMC: -
Download and documentation
Source: http://bioconductor.org/src/contrib/BioNERO_1.10.0.tar.gz
Documentation: http://bioconductor.org/manuals/BioNERO/man/BioNERO.pdf
Home page: http://bioconductor.org/packages/BioNERO
Links: http://bioconductor.org/vignettes/BioNERO/inst/doc/vignette_01_GCN_inference.html
Links: http://bioconductor.org/vignettes/BioNERO/inst/doc/vignette_01_GCN_inference.R
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