BioNetCAD

BioNetCAD is a software tool designed to aid in the construction of synthetic biochemical networks, which are used to design and construct biological systems with functions that do not exist in nature. The software provides a methodology for the construction of these networks based on three main steps: design, simulation, and experimental validation. BioNetCAD enables users to design abstract networks that can be implemented using CompuBioTicDB, a database of parts for synthetic biology. It also allows for simulations with HSim software and classical Ordinary Differential Equations (ODE).

Topic

Biology;Systems biology;Molecular interactions, pathways and networks

Detail

  • Operation: Design

  • Software interface: Graphical user interface

  • Language: -

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: Centre National de la Recherche Scientifique (CNRS), Languedoc-Roussillon region, BaSysBio FP6 EU funding, INCTTOX PROGRAM of Conselho Nacional de Desenvolvimento Científico e Tecnológico, Brazil (CNPq), Institut National de la Santé Et de la Recherche Médicale (INSERM).

  • Input: -

  • Output: -

  • Contact: Stéphanie Rialle stephanie.rialle@sysdiag.cnrs.fr, Franck Molina franck.molina@sysdiag.cnrs.fr

  • Collection: -

  • Maturity: -

Publications

  • BioNetCAD: design, simulation and experimental validation of synthetic biochemical networks.
  • Rialle S, et al. BioNetCAD: design, simulation and experimental validation of synthetic biochemical networks. BioNetCAD: design, simulation and experimental validation of synthetic biochemical networks. 2010; 26:2298-304. doi: 10.1093/bioinformatics/btq409
  • https://doi.org/10.1093/bioinformatics/btq409
  • PMID: 20628073
  • PMC: PMC2935418

Download and documentation

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