Biomartr

Biomartr is an R tool package to retrieve genomic functional annotation data in large-scale from NCBI RefSeq, NCBI Genbank, ENSEMBL, and UniProt databases.

Topic

Metagenomics;Genomics;Proteomics

Detail

Operation: Data retrieval
Software interface: Library
Language: R
License: GNU General Public License v2
Cost: Free
Version name: 1.0.2
Credit: European Research Council grant named EVOBREED, Gatsby Fellowship.
Input: -
Output: -
Contact: Hajk-Georg Drost hajk-georg.drost at tuebingen.mpg.de
Collection: -
Maturity: Stable

Publications

Biomartr: genomic data retrieval with R.
Drost HG, Paszkowski J. Biomartr: genomic data retrieval with R. Bioinformatics. 2017 Apr 15;33(8):1216-1217. doi: 10.1093/bioinformatics/btw821. PMID: 28110292; PMCID: PMC5408848.
https://doi.org/10.1093/bioinformatics/btw821
PMID: 28110292
PMC: PMC5408848

Download and documentation

Source: https://cran.r-project.org/src/contrib/biomartr_1.0.2.tar.gz
Documentation: https://cran.r-project.org/web/packages/biomartr/biomartr.pdf
Home page: https://cran.r-project.org/web/packages/biomartr/index.html
Links: https://cran.r-project.org/web/packages/biomartr/vignettes/BioMart_Examples.html
Links: https://cran.r-project.org/web/packages/biomartr/vignettes/Database_Retrieval.html
Links: https://cran.r-project.org/web/packages/biomartr/vignettes/Functional_Annotation.html

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