CMA

CMA (Classification for MicroArrays) is a software tool package that simplifies the complex process of microarray-based classification, especially in situations where the number of predictors greatly exceeds the number of observations (p >> n). The package automates various steps, including variable selection, parameter tuning, classifier construction, and unbiased evaluation of the constructed classifiers using a wide range of commonly used methods.

The main benefits of CMA are:

1. It provides users with an overview of the unbiased accuracy of the top-performing classifiers without requiring extensive time and effort.

2. The standardized evaluation framework within CMA can be helpful for researchers who want to compare a new classifier to existing approaches.

3. It is user-friendly and comprehensive, implementing the most commonly used classifier construction and evaluation methods.

Topic

Microarray experiment

Detail

  • Operation: Sequence classification;Sequence analysis

  • Software interface: Command-line user interface, Library

  • Language: R

  • License: GNU General Public License, version 2

  • Cost: Free

  • Version name: 1.62.0

  • Credit: The Porticus Foundation in the context of the International School for Technical Medicine and Clinical Bioinformatics.

  • Input: -

  • Output: -

  • Contact: Author: Martin Slawski ms@cs.uni-sb.de, Anne-Laure Boulesteix boulesteix@ibe.med.uni-muenchen.de, Christoph Bernau bernau@ibe.med.uni-muenchen.de.

  • Collection: -

  • Maturity: Stable

Publications

  • CMA: a comprehensive Bioconductor package for supervised classification with high dimensional data.
  • Slawski M, et al. CMA: a comprehensive Bioconductor package for supervised classification with high dimensional data. CMA: a comprehensive Bioconductor package for supervised classification with high dimensional data. 2008; 9:439. doi: 10.1186/1471-2105-9-439
  • https://doi.org/10.1186/1471-2105-9-439
  • PMID: 18925941
  • PMC: PMC2646186

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