CMA
CMA (Classification for MicroArrays) is a software tool package that simplifies the complex process of microarray-based classification, especially in situations where the number of predictors greatly exceeds the number of observations (p >> n). The package automates various steps, including variable selection, parameter tuning, classifier construction, and unbiased evaluation of the constructed classifiers using a wide range of commonly used methods.
The main benefits of CMA are:
1. It provides users with an overview of the unbiased accuracy of the top-performing classifiers without requiring extensive time and effort.
2. The standardized evaluation framework within CMA can be helpful for researchers who want to compare a new classifier to existing approaches.
3. It is user-friendly and comprehensive, implementing the most commonly used classifier construction and evaluation methods.
Topic
Microarray experiment
Detail
Operation: Sequence classification;Sequence analysis
Software interface: Command-line user interface, Library
Language: R
License: GNU General Public License, version 2
Cost: Free
Version name: 1.62.0
Credit: The Porticus Foundation in the context of the International School for Technical Medicine and Clinical Bioinformatics.
Input: -
Output: -
Contact: Author: Martin Slawski ms@cs.uni-sb.de, Anne-Laure Boulesteix boulesteix@ibe.med.uni-muenchen.de, Christoph Bernau bernau@ibe.med.uni-muenchen.de.
Collection: -
Maturity: Stable
Publications
- CMA: a comprehensive Bioconductor package for supervised classification with high dimensional data.
- Slawski M, et al. CMA: a comprehensive Bioconductor package for supervised classification with high dimensional data. CMA: a comprehensive Bioconductor package for supervised classification with high dimensional data. 2008; 9:439. doi: 10.1186/1471-2105-9-439
- https://doi.org/10.1186/1471-2105-9-439
- PMID: 18925941
- PMC: PMC2646186
Download and documentation
Documentation: https://bioconductor.org/packages/3.10/bioc//manuals/CMA/man/CMA.pdf
Home page: http://bioconductor.org/packages/release/bioc/html/CMA.html
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