CNVRanger

The 'CNVRanger' software tool is an R package designed for the structured downstream analysis of copy number variations (CNVs). It offers a comprehensive toolbox for various CNV-related analyses. The functionalities include summarizing individual CNV calls across a population, assessing overlap with functional genomic regions, and performing genome-wide association analyses with gene expression and quantitative phenotypes. The 'CNVRanger' package provides a versatile set of tools to facilitate the investigation of CNVs in association with diseases and production traits across different species.

Topic

Genotype and phenotype;DNA polymorphism;Microarray experiment

Detail

  • Operation: RNA-Seq quantification;SNP detection;Gene expression QTL analysis

  • Software interface: Library

  • Language: R

  • License: Artistic License 2.0

  • Cost: Free

  • Version name: 1.18.0

  • Credit: -

  • Input: -

  • Output: -

  • Contact: Ludwig Geistlinger ludwig.geistlinger@gmail.com

  • Collection: -

  • Maturity: Stable

Publications

  • CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes.
  • da Silva V, et al. CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes. CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes. 2020; 36:972-973. doi: 10.1093/bioinformatics/btz632
  • https://doi.org/10.1093/BIOINFORMATICS/BTZ632
  • PMID: 31392308
  • PMC: PMC9887538

Download and documentation

< Back to DB search