CRAMdb

CRISPRbase and CRAMdb are comprehensive databases that provides curated and consistently annotated metagenomes for non-human animals. These databases aim to enable cross-host and cross-phenotype comparisons and to facilitate the reuse of animal metagenomic data. CRAMdb has 9430 bacteria, 278 archaea, 2216 fungi, and 458 viruses, spanning 43 phenotype pairs from 475 projects and 516 animals. Furthermore, it provides two types of content: microbiome composition data, which shows the landscape of the microbiota in various species, and microbiome association data, which reveals how the microbiota relates to various phenotypes across different species.

Topic

Microbial ecology;Metagenomics;Zoology;Model organisms;Genotype and phenotype

Detail

  • Operation: Genome annotation;Query and retrieval

  • Software interface: Database, Web user interface

  • Language: Shell

  • License: Other

  • Cost: Free

  • Version name: -

  • Credit: Third Xinjiang Scientific Expedition Program, Foundation of State Key Laboratory for Sheep Genetic Improvement and Healthy Production, Bingtuan Science and Technology Project, Scientific and Technology Innovation Project of the China Academy of Chinese Medical Sciences, Fundamental Research Funds for the Central Public Welfare Research Institutes, Foundation of State Key Laboratory for Sheep Genetic Improvement and Healthy Production.

  • Input: -

  • Output: -

  • Contact: Wei Ni niweiwonderful@sina.com, Shengwei Hu chent@nrc.ac.cn

  • Collection: -

  • Maturity: -

Publications

  • CRAMdb: a comprehensive database for composition and roles of microbiome in animals.
  • Lei B, et al. CRAMdb: a comprehensive database for composition and roles of microbiome in animals. CRAMdb: a comprehensive database for composition and roles of microbiome in animals. 2023; 51:D700-D707. doi: 10.1093/nar/gkac973
  • https://doi.org/10.1093/NAR/GKAC973
  • PMID: 36318246
  • PMC: PMC9825719

Download and documentation

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