CePa
CePa is an R tool for finding influential pathways using network topology data, weighted by multiple network centralities. The CePa algorithm includes functions for over-representation analysis and gene-set analysis.
Topic
Molecular interactions, pathways and networks;Genetics;Statistics and probability
Detail
Operation: Pathway or network analysis;Expression analysis
Software interface: Library
Language: R
License: GNU General Public License v2 | v3
Cost: Free
Version name: 0.8.0
Credit: National Natural Science Foundation of China, Major State Basic Research Project, Nature Science Foundation of Jiangsu Province.
Input: -
Output: -
Contact: Zuguang Gu z.gu@dkfz.de
Collection: -
Maturity: Stable
Publications
- CePa: an R package for finding significant pathways weighted by multiple network centralities.
- Gu Z, Wang J. CePa: an R package for finding significant pathways weighted by multiple network centralities. Bioinformatics. 2013 Mar 1;29(5):658-60. doi: 10.1093/bioinformatics/btt008. Epub 2013 Jan 10. PMID: 23314125.
- https://doi.org/10.1093/bioinformatics/btt008
- PMID: 23314125
- PMC: -
Download and documentation
Source: https://cran.r-project.org/src/contrib/CePa_0.8.0.tar.gz
Documentation: https://cran.r-project.org/web/packages/CePa/CePa.pdf
Links: https://cran.r-project.org/web/packages/CePa/vignettes/CePa.pdf
Links: https://cran.r-project.org/web/packages/CePa/vignettes/analysis-p53.pdf
Links: https://cran.r-project.org/web/packages/CePa/vignettes/parsing-PID-pathway-data.pdf
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