CellNetVis

CellNetVis is a web tool that visualizes biomolecular interaction networks, representing the components of a cell and their interactions with nodes and edges. It uses a force-directed layout algorithm to organize networks by cellular compartments, making it easy to quickly identify where network elements are located and concentrated. CellNetVis is designed for networks generated by the Integrated Interactome System and can handle large and dense networks, with the ability to reposition the network while the user is interacting, making it a powerful tool for exploring complex networks in a cell.

Topic

Molecular interactions, pathways and networks;Cell biology

Detail

  • Operation: Pathway or network visualisation

  • Software interface: Web user interface

  • Language: Javascript

  • License: GNU General Public License v3

  • Cost: Free

  • Version name: -

  • Credit: Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq), Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES), Brazilian Agency CAPES.

  • Input: -

  • Output: -

  • Contact: henry@icmc.usp.br

  • Collection: -

  • Maturity: -

Publications

  • CellNetVis: a web tool for visualization of biological networks using force-directed layout constrained by cellular components.
  • Heberle H, et al. CellNetVis: a web tool for visualization of biological networks using force-directed layout constrained by cellular components. CellNetVis: a web tool for visualization of biological networks using force-directed layout constrained by cellular components. 2017; 18:395. doi: 10.1186/s12859-017-1787-5
  • https://doi.org/10.1186/s12859-017-1787-5
  • PMID: 28929969
  • PMC: PMC5606216

Download and documentation

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