ChIPseeker

ChIPseeker is a Bioconductor package designed for the comprehensive analysis of diverse epigenomic datasets, which are increasingly prevalent due to advancements in next-generation sequencing. This tool addresses key aspects of computational biology related to epigenetics, offering functionalities for data preparation, annotation, comparison, and visualization. The software supports the exploration and interpretation of variable epigenomic datasets through fundamental functions.

Topic

Epigenomics;ChIP-on-chip;Epistasis;Genotype and phenotype

Detail

  • Operation: Visualisation;Text annotation;Deposition;Data retrieval

  • Software interface: Library

  • Language: R

  • License: Artistic License 2.0

  • Cost: Free

  • Version name: 1.38.0

  • Credit: -

  • Input: -

  • Output: -

  • Contact: Guangchuang Yu guangchuangyu@gmail.com

  • Collection: -

  • Maturity: Stable

Publications

  • Exploring Epigenomic Datasets by ChIPseeker.
  • Wang Q, et al. Exploring Epigenomic Datasets by ChIPseeker. Exploring Epigenomic Datasets by ChIPseeker. 2022; 2:e585. doi: 10.1002/cpz1.585
  • https://doi.org/10.1002/CPZ1.585
  • PMID: 36286622
  • PMC: -
  • ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization.
  • Yu G, et al. ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization. ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization. 2015; 31:2382-3. doi: 10.1093/bioinformatics/btv145
  • https://doi.org/10.1093/bioinformatics/btv145
  • PMID: 25765347
  • PMC: -

Download and documentation

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