ChromoViz

ChromoViz is an R package that allows for the visualization of microarray gene expression data, cross-species and cross-platform comparisons, and non-expression genomic data onto chromosomes. It proposes a new chromosomal visualization format to combine and visualize genomic data from various sources. The software uses Javascript-enabled scalable vector graphics for interactive visualization and navigation of data objects on the Web.

Topic

Microarray experiment;DNA;Gene expression;Nucleic acid structure analysis

Detail

  • Operation: Gene expression analysis

  • Software interface: Command-line user interface

  • Language: R

  • License: -

  • Cost: Free

  • Version name: 1.1

  • Credit: -

  • Input: -

  • Output: -

  • Contact: Jihoon Kim jihoon@stat.wisc.edu

  • Collection: -

  • Maturity: -

Publications

  • ChromoViz: multimodal visualization of gene expression data onto chromosomes using scalable vector graphics.
  • Kim J, et al. ChromoViz: multimodal visualization of gene expression data onto chromosomes using scalable vector graphics. ChromoViz: multimodal visualization of gene expression data onto chromosomes using scalable vector graphics. 2004; 20:1191-2. doi: 10.1093/bioinformatics/bth052
  • https://doi.org/10.1093/bioinformatics/bth052
  • PMID: 14764551
  • PMC: -

Download and documentation

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