ClonArch is a software tool for visualizing the spatial distribution of clones and phylogenetic trees. The ClonArch algorithm uses marching squares to compute perimeters between actual and simulated tumor clones.


Phylogenetics;Genetic variation;Oncology;mapping


  • Operation: Phylogenetic tree visualisation;Phylogenetic reconstruction;Protein architecture analysis

  • Software interface: Web user interface

  • Language: JavaScript

  • License: GNU Affero General Public License

  • Cost: Free

  • Version name: 1.3.2

  • Credit: National Science Foundation

  • Input: -

  • Output: -

  • Contact: Mohammed El-Kebir

  • Collection: -

  • Maturity: Stable


  • ClonArch: visualizing the spatial clonal architecture of tumors
  • Wu J, El-Kebir M. ClonArch: visualizing the spatial clonal architecture of tumors. Bioinformatics. 2020 Jul 1;36(Suppl_1):i161-i168. doi: 10.1093/bioinformatics/btaa471. PMID: 32657368; PMCID: PMC7355227.
  • PMID: 32657368
  • PMC: PMC7355227

Download and documentation

< Back to DB search