Clustal Omega

The original Clustal Omega tool for multiple protein sequence alignment. Clustal Omega is capable of aligning thousand of sequences and is an improvement of the previous version of Clustal, ClustalW and ClustalX, using HMMs, based on HHalign from Johannes Soeding. Clustal Omega also makes use of precomputed aligment information found in public databases.

Topic

Proteomics

Detail

  • Operation: Multiple sequence alignment

  • Software interface: Web application; command-line user interface

  • Language: C

  • License: GNU GPL v2+

  • Cost: Free

  • Version name: 1.2.4

  • Credit: Science Foundation Ireland

  • Input: Protein sequence in FASTA format

  • Output: FASTA,CLUSTAL, MSF, PHYLIP, SELEX,Stockholm, Vienna

  • Contact: clustalw@ucd.ie

  • Collection: Clustal

  • Maturity: Mature

Publications

  • Clustal Omega for making accurate alignments of many protein sciences.
  • Kaushik A, et al. miRMOD: a tool for identification and analysis of 5' and 3' miRNA modifications in Next Generation Sequencing small RNA data. miRMOD: a tool for identification and analysis of 5' and 3' miRNA modifications in Next Generation Sequencing small RNA data. 2015; 3:e1332. doi: 10.7717/peerj.1332
  • https://doi.org/10.1002/pro.3290
  • PMID: -
  • PMC: -
  • Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega.
  • Sievers F, et al. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. 2011; 7:539. doi: 10.1038/msb.2011.75
  • https://doi.org/10.1038/msb.2011.75
  • PMID: 21988835
  • PMC: PMC3261699

Download and documentation

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