There are two versions of Clustal 2 multiple sequence alignment software: 1) Clustal W command-line tool and 2) Clustal X with graphical user interface.


Phylogeny;Sequence analysis;Nucleic acid sites, features and motifs;Nucleic acid structure analysis;Sequence sites, features and motifs


  • Operation: Multiple sequence alignment

  • Software interface: Command-line user interface

  • Language: C

  • License: GNU Lesser GPL

  • Cost: Free

  • Version name: 2.1

  • Credit: -

  • Input: FASTA

  • Output: ClustalW with character counts;ClustalW;Pearson/FASTA;MSF;NEXUS;PHYLIP;SELEX;STOCKHOLM;VIENNA

  • Contact:

  • Collection: Clustal

  • Maturity: Mature



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