CyClus3D

CyClus3D is a Cytoscape plugin that employs a 3D spectral clustering algorithm to cluster composite three-node network motifs, which represent functional relationships between different data types in molecular networks. The tool allows the identification of functional modules that are not detectable by traditional graph clustering algorithms.

Topic

Molecular interactions, pathways and networks

Detail

  • Operation: Pathway or network visualisation

  • Software interface: Graphical user interface

  • Language: Java

  • License: -

  • Cost: Free

  • Version name: -

  • Credit: -

  • Input: -

  • Output: -

  • Contact: thpar@psb.vib-ugent.be

  • Collection: -

  • Maturity: -

Publications

  • CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks.
  • Audenaert P, et al. CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks. CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks. 2011; 27:1587-8. doi: 10.1093/bioinformatics/btr182
  • https://doi.org/10.1093/bioinformatics/btr182
  • PMID: 21478195
  • PMC: -

Download and documentation

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