CytoASP

CytoASP is a tool to check the consistency of influence graphs and make predictions and repairs, incorporating the functionality of BioASP. The CytoASP tool also provides customized visualization of predictions and repairs via Cytoscape. And the possibility to analyze multiple networks in parallel with a multi-core architecture.

Topic

Systems biology;Molecular interactions, pathways and networks;Data visualisation

Detail

  • Operation: Metabolic network modelling

  • Software interface: Command-line user interface

  • Language: Java;Python

  • License: The MIT licence

  • Cost: Free

  • Version name: -

  • Credit: Leverhulme Trust, EU; HEALTH-F2-2011-261366.

  • Input: -

  • Output: -

  • Contact: akittas@gmail.com

  • Collection: -

  • Maturity: Stable

Publications

  • CytoASP: a Cytoscape app for qualitative consistency reasoning, prediction and repair in biological networks.
  • Kittas A, Barozet A, Sereshti J, Grabe N, Tsoka S. CytoASP: a Cytoscape app for qualitative consistency reasoning, prediction and repair in biological networks. BMC Syst Biol. 2015 Jul 11;9:34. doi: 10.1186/s12918-015-0179-6. PMID: 26163265; PMCID: PMC4499222.
  • https://doi.org/10.1186/s12918-015-0179-6
  • PMID: 26163265
  • PMC: PMC4499222

Download and documentation

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