DAMBE7
DAMBE7 is a tool for genomic and phylogenetic sequence data analysis. The DAMBE7 package includes functions for 1. Sequence alignment, 2. Molecular phylogenetics, 3. Position weight matrix to analyze sequence motifs, 4. Perceptron for classification of sequence motifs, 5. Gibbs sampler, 6. Hidden Markov models, 7. Secondary structure prediction, 8. rRNA anticodon identification, 9. Codon usage bias, 10. Computation of isoelectric point, and 11. Peptide mass fingerprinting. DAMBE7 works with a variety of well-known sequence formats.
Topic
Phylogenetics;Genomics;Nucleic acid structure analysis
Detail
Operation: Phylogenetic tree analysis;Sequence alignment
Software interface: Graphical user interface
Language: -
License: -
Cost: Free
Version name: -
Credit: Natural Science and Engineering Research Council of Canada.
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Output: -
Contact: xxia@uottawa.ca
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Maturity: -
Publications
- DAMBE7: New and Improved Tools for Data Analysis in Molecular Biology and Evolution.
- Xia X. DAMBE7: New and Improved Tools for Data Analysis in Molecular Biology and Evolution. DAMBE7: New and Improved Tools for Data Analysis in Molecular Biology and Evolution. 2018; 35:1550-1552. doi: 10.1093/molbev/msy073
- https://doi.org/10.1093/molbev/msy073
- PMID: 29669107
- PMC: PMC5967572
Download and documentation
Documentation: http://dambe.bio.uottawa.ca/software_download/LabManualDAMBE.pdf
Home page: http://dambe.bio.uottawa.ca/DAMBE/dambe.aspx
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