DECO

DECO (Integrated analysis of de novo mutations, rare case/control variants, and omics information via gene sets) is an integrated method specifically designed to enhance the analysis of rare variants and gene sets in identifying risk genes for neuropsychiatric disorders and other diseases. Recognizing the limitations of current approaches that only capture a portion of predicted causal genes, DECO employs a strategy that jointly models rare variants and gene sets. This approach allows for the direct testing of gene-set enrichment within the statistical model and leverages enriched gene sets to rank existing genes and prioritize additional risk genes for studied disorders.

Topic

Molecular interactions, pathways and networks;Genetic variation;Rare diseases;Gene expression;Exome sequencing

Detail

  • Operation: Gene-set enrichment analysis;Variant prioritisation;Collapsing methods;Genotyping

  • Software interface: Workbench

  • Language: R

  • License: MIT License

  • Cost: Free of charge

  • Version name: -

  • Credit: Brain and Behavioral Research Foundation, National Institute of Mental Health, Eunice Kennedy Shriver National Institute of Child Health and Human Development.

  • Input: -

  • Output: -

  • Contact: Tan-Hoang Nguyen tanhoang.nguyen@vcuhealth.org

  • Collection: -

  • Maturity: -

Publications

  • DECO: a framework for jointly analyzing de novo and rare case/control variants, and biological pathways.
  • Nguyen TH, et al. DECO: a framework for jointly analyzing de novo and rare case/control variants, and biological pathways. DECO: a framework for jointly analyzing de novo and rare case/control variants, and biological pathways. 2021; 22:(unknown pages). doi: 10.1093/bib/bbab067
  • https://doi.org/10.1093/BIB/BBAB067
  • PMID: 33791774
  • PMC: PMC8425460

Download and documentation


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