DECO
DECO (Integrated analysis of de novo mutations, rare case/control variants, and omics information via gene sets) is an integrated method specifically designed to enhance the analysis of rare variants and gene sets in identifying risk genes for neuropsychiatric disorders and other diseases. Recognizing the limitations of current approaches that only capture a portion of predicted causal genes, DECO employs a strategy that jointly models rare variants and gene sets. This approach allows for the direct testing of gene-set enrichment within the statistical model and leverages enriched gene sets to rank existing genes and prioritize additional risk genes for studied disorders.
Topic
Molecular interactions, pathways and networks;Genetic variation;Rare diseases;Gene expression;Exome sequencing
Detail
Operation: Gene-set enrichment analysis;Variant prioritisation;Collapsing methods;Genotyping
Software interface: Workbench
Language: R
License: MIT License
Cost: Free of charge
Version name: -
Credit: Brain and Behavioral Research Foundation, National Institute of Mental Health, Eunice Kennedy Shriver National Institute of Child Health and Human Development.
Input: -
Output: -
Contact: Tan-Hoang Nguyen tanhoang.nguyen@vcuhealth.org
Collection: -
Maturity: -
Publications
- DECO: a framework for jointly analyzing de novo and rare case/control variants, and biological pathways.
- Nguyen TH, et al. DECO: a framework for jointly analyzing de novo and rare case/control variants, and biological pathways. DECO: a framework for jointly analyzing de novo and rare case/control variants, and biological pathways. 2021; 22:(unknown pages). doi: 10.1093/bib/bbab067
- https://doi.org/10.1093/BIB/BBAB067
- PMID: 33791774
- PMC: PMC8425460
Download and documentation
Source: https://github.com/hoangtn/DECO
Documentation: https://github.com/hoangtn/DECO/blob/master/README.md
Home page: https://github.com/hoangtn/DECO
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