DEGseq

DEGseq is an R package designed for identifying differentially expressed genes or isoforms in RNA-seq data from different samples. It integrates three existing methods and introduces two new methods based on MA-plot for detecting and visualizing gene expression differences.

Topic

RNA-Seq;Gene expression

Detail

  • Operation: Differential gene expression analysis;RNA-Seq analysis

  • Software interface: Command-line user interface

  • Language: R

  • License: GNU Lesser General Public License v2

  • Cost: Free

  • Version name: 1.52.0

  • Credit: National Natural Science Foundation of China, the National Basic Research Program of China, Open Research Fund of State Key Laboratory of Bioelectronics, Southeast University of China.

  • Input: -

  • Output: -

  • Contact: Likun Wang wanglk@hsc.pku.edu.cn

  • Collection: -

  • Maturity: Stable

Publications

  • DEGseq: an R package for identifying differentially expressed genes from RNA-seq data.
  • Wang L, et al. DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. 2010; 26:136-8. doi: 10.1093/bioinformatics/btp612
  • https://doi.org/10.1093/bioinformatics/btp612
  • PMID: 19855105
  • PMC: -

Download and documentation

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