DEsubs

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Topic

Systems biology;Molecular interactions, pathways and networks;Transcriptomics

Detail

  • Operation: Pathway or network analysis;Gene expression analysis

  • Software interface: Command-line user interface,Library

  • Language: R

  • License: The GNU General Public License v3.0

  • Cost: Free

  • Version name: 1.28.0

  • Credit: -

  • Input: Gene expression matrix

  • Output: Pathway or network, Plot

  • Contact: Aristidis G. Vrahatis agvrahatis@upatras.gr, Panos Balomenos balomenos@upatras.gr

  • Collection: -

  • Maturity: Mature

Publications

  • DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq experiments.
  • Vrahatis AG, et al. DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq experiments. DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq experiments. 2016; 32:3844-3846. doi: 10.1093/bioinformatics/btw544
  • https://doi.org/10.1093/bioinformatics/btw544
  • PMID: 27542770
  • PMC: -

Download and documentation

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