DGCA

DGCA is an R tool to analyze the differential correlation of matrices using conditions defined by a design matrix in gene expression data. The DGCA contains functions for filtering, processing, saving, visualizing, and interpreting differential correlations of identifier pairs across the entire identifier space or concerning a particular set of identifiers, differential correlation analysis on clusters, and generation of empirical p-values.

Topic

Gene expression;Systems biology;Gene and protein families

Detail

  • Operation: Differential gene expression analysis

  • Software interface: Library

  • Language: R

  • License: GNU General Public License v3

  • Cost: Free

  • Version name: 1.0.2

  • Credit: NIH-National Institute on Aging, NIH-National Cancer Institute (NCI, http:--www.cancer.gov-), NIH-National Institute of Allergy and Infectious Diseases.

  • Input: -

  • Output: -

  • Contact: Andrew McKenzie amckenz@gmail.com

  • Collection: -

  • Maturity: Stable

Publications

  • DGCA: A comprehensive R package for Differential Gene Correlation Analysis.
  • McKenzie AT, Katsyv I, Song WM, Wang M, Zhang B. DGCA: A comprehensive R package for Differential Gene Correlation Analysis. BMC Syst Biol. 2016 Nov 15;10(1):106. doi: 10.1186/s12918-016-0349-1. PMID: 27846853; PMCID: PMC5111277.
  • https://doi.org/10.1186/s12918-016-0349-1
  • PMID: 27846853
  • PMC: PMC5111277

Download and documentation

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