Delila-PY

Delila-PY is a software tool that helps predict potential DNA binding motifs in order to understand gene expression across different domains of life. It uses the Delila suite of software to identify these motifs and provides an easy-to-use interface for users.

Topic

Sequence sites, features and motifs;Workflows;Gene expression;DNA;ChIP-seq

Detail

  • Operation: Fold recognition;Gene prediction;Sequence motif recognition

  • Software interface: Command-line interface

  • Language: C,Python

  • License: Not stated

  • Cost: Free of charge

  • Version name: -

  • Credit: The Great Lakes Bioenergy Research Center, U.S. Department of Energy, Office of Science, Office of Biological and Environmental Research.

  • Input: -

  • Output: -

  • Contact: Timothy J. Donohue tdonohue@bact.wisc.edu

  • Collection: -

  • Maturity: -

Publications

  • Delila-PY, a Pipeline for Utilizing the Delila Suite of Software to Identify Potential DNA Binding Motifs.
  • Myers KS, et al. Delila-PY, a Pipeline for Utilizing the Delila Suite of Software to Identify Potential DNA Binding Motifs. Delila-PY, a Pipeline for Utilizing the Delila Suite of Software to Identify Potential DNA Binding Motifs. 2021; 10:(unknown pages). doi: 10.1128/MRA.00160-21
  • https://doi.org/10.1128/MRA.00160-21
  • PMID: 33858925
  • PMC: PMC8050967

Download and documentation

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