DiNAMO

DiNAMO is a bioinformatics software designed to identify over-represented approximate motifs in DNA sequences. It uses an exhaustive and efficient algorithm for IUPAC motif discovery and is robust to noise. It is suitable for numerous potential applications such as ChIP-seq peaks and Systematic Sequencing Error analysis, and compares favorably with other existing methods.

Topic

Sequence motifs;DNA-Seq;ChIP-seq

Detail

  • Operation: Sequence motif discovery

  • Software interface: Command-line user interface;Library

  • Language: C++

  • License: GNU AFFERO GENERAL PUBLIC LICENSE

  • Cost: Free

  • Version name: V1.0

  • Credit: The Hauts-de-France region and the University Hospital of Lille, Inria.

  • Input: -

  • Output: -

  • Contact: chadi.saad@univ-lille1.fr

  • Collection: -

  • Maturity: -

Publications

  • DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data.
  • Saad C, et al. DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data. DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data. 2018; 19:223. doi: 10.1186/s12859-018-2215-1
  • https://doi.org/10.1186/s12859-018-2215-1
  • PMID: 29890948
  • PMC: PMC5996464

Download and documentation

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