DnaSP

A software package for the analysis of DNA polymorphisms using data from a multiple sequence aligned data. Features: Estimate various measures of DNA sequence variation within and between populations. Estimate linkage disequilibrium, recombination, gene flow and gene conversion parameters. A number of neutrality tests such as, the Hudson, Kreitman and Aguadé (1987), Tajima (1989), McDonald and Kreitman (1991), Fu and Li (1993), and Fu (1997), Ramos-Onsins and Rozas (2002), Achaz (2009) tests, and compute confidence intervals by the coalescent. Input data formats: FASTA; MEGA; NBRF/PIR; NEXUS; PHYLIP; HapMap3; VCF; Multi-MSA; Arlequin.

Topic

Biology, Genetics, Molecular genetics, Genetic variation, DNA polymorphism

Detail

  • Operation: Analysis, Sequence analysis, Nucleic acid sequence analysis, Genetic variation analysis

  • Software interface: Desktop graphical user interface

  • Language: Visual Basic.NET

  • License: -

  • Cost: Free for non-commercial

  • Version name: 6.12

  • Credit: Rozas J, Ferrer-Mata A, Sánchez-DelBarrio JC, Guirao-Rico S, Librado

  • Input: -

  • Output: -

  • Contact: jrozas at ub.edu

  • Collection: -

  • Maturity: -

Publications

  • DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets.
  • Rozas J, et al. DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets. DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets. 2017; 34:3299-3302. doi: 10.1093/molbev/msx248
  • https://doi.org/10.1093/molbev/msx248
  • PMID: 29029172
  • PMC: -

Download and documentation

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